esv2763269
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:26,688
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 141 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 141 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 43 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763269 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 55,261,738 | 55,288,425 |
| esv2763269 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 55,295,766 | 55,322,453 |
| esv2763269 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 55,270,806 | 55,297,493 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7027231 | copy number loss | SW_1055 | SNP array | SNP genotyping analysis | 34 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7027231 | Remapped | Perfect | NC_000003.12:g.(?_ 55261738)_(5528842 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 55,261,738 | 55,288,425 |
| essv7027231 | Remapped | Perfect | NC_000003.11:g.(?_ 55295766)_(5532245 3_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 55,295,766 | 55,322,453 |
| essv7027231 | Submitted genomic | NC_000003.10:g.(?_ 55270806)_(5529749 3_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 55,270,806 | 55,297,493 |