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dbVar

Database of genomic structural variation

esv2763694

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:31,423

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 312 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):29,934,470-29,965,892

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763694	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	29,934,470	29,965,892
esv2763694	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	30,330,459	30,361,881
esv2763694	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000022.9	Chr22	28,660,459	28,691,881

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7004750	copy number loss	SW_1144	SNP array	SNP genotyping analysis	45
essv7004751	copy number loss	SW_0008	SNP array	SNP genotyping analysis	47

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7004750	Remapped	Perfect	NC_000022.11:g.(?_ 29934470)_(2996589 2_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	29,934,470	29,965,892
essv7004751	Remapped	Perfect	NC_000022.11:g.(?_ 29941597)_(2994833 4_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	29,941,597	29,948,334
essv7004750	Remapped	Perfect	NC_000022.10:g.(?_ 30330459)_(3036188 1_?)del	GRCh37.p13	First Pass	NC_000022.10	Chr22	30,330,459	30,361,881
essv7004751	Remapped	Perfect	NC_000022.10:g.(?_ 30337586)_(3034432 3_?)del	GRCh37.p13	First Pass	NC_000022.10	Chr22	30,337,586	30,344,323
essv7004750	Submitted genomic		NC_000022.9:g.(?_2 8660459)_(28691881 _?)del	NCBI36 (hg18)		NC_000022.9	Chr22	28,660,459	28,691,881
essv7004751	Submitted genomic		NC_000022.9:g.(?_2 8667586)_(28674323 _?)del	NCBI36 (hg18)		NC_000022.9	Chr22	28,667,586	28,674,323

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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