esv2763708
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:124,582
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 581 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 581 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 177 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 100,599,084 | 100,723,665 |
| esv2763708 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 100,317,928 | 100,442,509 |
| esv2763708 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 101,800,618 | 101,925,199 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7027675 | copy number gain | SW_1064 | SNP array | SNP genotyping analysis | 36 |
| essv7027676 | copy number gain | SW_0607 | SNP array | SNP genotyping analysis | 34 |
| essv7027677 | copy number gain | SW_0173 | SNP array | SNP genotyping analysis | 53 |
| essv7027678 | copy number gain | SW_0214 | SNP array | SNP genotyping analysis | 25 |
| essv7027680 | copy number gain | SW_0008 | SNP array | SNP genotyping analysis | 47 |
| essv7027681 | copy number gain | SW_0568 | SNP array | SNP genotyping analysis | 30 |
| essv7027682 | copy number gain | SW_1088 | SNP array | SNP genotyping analysis | 37 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7027675 | Remapped | Perfect | NC_000003.12:g.(?_ 100599084)_(100723 634_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 100,599,084 | 100,723,634 |
| essv7027676 | Remapped | Perfect | NC_000003.12:g.(?_ 100605431)_(100723 665_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 100,605,431 | 100,723,665 |
| essv7027677 | Remapped | Perfect | NC_000003.12:g.(?_ 100621224)_(100709 093_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 100,621,224 | 100,709,093 |
| essv7027678 | Remapped | Perfect | NC_000003.12:g.(?_ 100621224)_(100709 093_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 100,621,224 | 100,709,093 |
| essv7027680 | Remapped | Perfect | NC_000003.12:g.(?_ 100621224)_(100723 634_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 100,621,224 | 100,723,634 |
| essv7027681 | Remapped | Perfect | NC_000003.12:g.(?_ 100621224)_(100723 665_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 100,621,224 | 100,723,665 |
| essv7027682 | Remapped | Perfect | NC_000003.12:g.(?_ 100623358)_(100723 665_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 100,623,358 | 100,723,665 |
| essv7027675 | Remapped | Perfect | NC_000003.11:g.(?_ 100317928)_(100442 478_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 100,317,928 | 100,442,478 |
| essv7027676 | Remapped | Perfect | NC_000003.11:g.(?_ 100324275)_(100442 509_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 100,324,275 | 100,442,509 |
| essv7027677 | Remapped | Perfect | NC_000003.11:g.(?_ 100340068)_(100427 937_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 100,340,068 | 100,427,937 |
| essv7027678 | Remapped | Perfect | NC_000003.11:g.(?_ 100340068)_(100427 937_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 100,340,068 | 100,427,937 |
| essv7027680 | Remapped | Perfect | NC_000003.11:g.(?_ 100340068)_(100442 478_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 100,340,068 | 100,442,478 |
| essv7027681 | Remapped | Perfect | NC_000003.11:g.(?_ 100340068)_(100442 509_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 100,340,068 | 100,442,509 |
| essv7027682 | Remapped | Perfect | NC_000003.11:g.(?_ 100342202)_(100442 509_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 100,342,202 | 100,442,509 |
| essv7027675 | Submitted genomic | NC_000003.10:g.(?_ 101800618)_(101925 168_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 101,800,618 | 101,925,168 | ||
| essv7027676 | Submitted genomic | NC_000003.10:g.(?_ 101806965)_(101925 199_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 101,806,965 | 101,925,199 | ||
| essv7027677 | Submitted genomic | NC_000003.10:g.(?_ 101822758)_(101910 627_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 101,822,758 | 101,910,627 | ||
| essv7027678 | Submitted genomic | NC_000003.10:g.(?_ 101822758)_(101910 627_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 101,822,758 | 101,910,627 | ||
| essv7027680 | Submitted genomic | NC_000003.10:g.(?_ 101822758)_(101925 168_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 101,822,758 | 101,925,168 | ||
| essv7027681 | Submitted genomic | NC_000003.10:g.(?_ 101822758)_(101925 199_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 101,822,758 | 101,925,199 | ||
| essv7027682 | Submitted genomic | NC_000003.10:g.(?_ 101824892)_(101925 199_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 101,824,892 | 101,925,199 |