esv2763721
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:53,798
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 574 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 574 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 162 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763721 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 173,518,093 | 173,571,890 |
| esv2763721 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 173,235,883 | 173,289,680 |
| esv2763721 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 174,718,577 | 174,772,374 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7028165 | copy number gain | SW_0047 | SNP array | SNP genotyping analysis | 42 |
| essv7028166 | copy number gain | SW_1027 | SNP array | SNP genotyping analysis | 33 |
| essv7028167 | copy number gain | SW_1308 | SNP array | SNP genotyping analysis | 32 |
| essv7028169 | copy number gain | SW_0076 | SNP array | SNP genotyping analysis | 46 |
| essv7028170 | copy number gain | SW_0775 | SNP array | SNP genotyping analysis | 68 |
| essv7028171 | copy number gain | SW_0804 | SNP array | SNP genotyping analysis | 34 |
| essv7028172 | copy number gain | SW_0888 | SNP array | SNP genotyping analysis | 49 |
| essv7028173 | copy number gain | SW_1148 | SNP array | SNP genotyping analysis | 39 |
| essv7028174 | copy number gain | SW_1188 | SNP array | SNP genotyping analysis | 32 |
| essv7028175 | copy number gain | SW_1354 | SNP array | SNP genotyping analysis | 31 |
| essv7028176 | copy number gain | SW_1430 | SNP array | SNP genotyping analysis | 34 |
| essv7028177 | copy number gain | SW_0691 | SNP array | SNP genotyping analysis | 39 |
| essv7028178 | copy number gain | SW_1013 | SNP array | SNP genotyping analysis | 32 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7028165 | Remapped | Perfect | NC_000003.12:g.(?_ 173518093)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,518,093 | 173,571,890 |
| essv7028166 | Remapped | Perfect | NC_000003.12:g.(?_ 173518093)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,518,093 | 173,571,890 |
| essv7028167 | Remapped | Perfect | NC_000003.12:g.(?_ 173518093)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,518,093 | 173,571,890 |
| essv7028169 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028170 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028171 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028172 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028173 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028174 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028175 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028176 | Remapped | Perfect | NC_000003.12:g.(?_ 173522845)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,845 | 173,571,890 |
| essv7028177 | Remapped | Perfect | NC_000003.12:g.(?_ 173529689)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,529,689 | 173,571,890 |
| essv7028178 | Remapped | Perfect | NC_000003.12:g.(?_ 173529689)_(173571 890_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,529,689 | 173,571,890 |
| essv7028165 | Remapped | Perfect | NC_000003.11:g.(?_ 173235883)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,235,883 | 173,289,680 |
| essv7028166 | Remapped | Perfect | NC_000003.11:g.(?_ 173235883)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,235,883 | 173,289,680 |
| essv7028167 | Remapped | Perfect | NC_000003.11:g.(?_ 173235883)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,235,883 | 173,289,680 |
| essv7028169 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028170 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028171 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028172 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028173 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028174 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028175 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028176 | Remapped | Perfect | NC_000003.11:g.(?_ 173240635)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,240,635 | 173,289,680 |
| essv7028177 | Remapped | Perfect | NC_000003.11:g.(?_ 173247479)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,247,479 | 173,289,680 |
| essv7028178 | Remapped | Perfect | NC_000003.11:g.(?_ 173247479)_(173289 680_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 173,247,479 | 173,289,680 |
| essv7028165 | Submitted genomic | NC_000003.10:g.(?_ 174718577)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,718,577 | 174,772,374 | ||
| essv7028166 | Submitted genomic | NC_000003.10:g.(?_ 174718577)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,718,577 | 174,772,374 | ||
| essv7028167 | Submitted genomic | NC_000003.10:g.(?_ 174718577)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,718,577 | 174,772,374 | ||
| essv7028169 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028170 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028171 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028172 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028173 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028174 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028175 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028176 | Submitted genomic | NC_000003.10:g.(?_ 174723329)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,723,329 | 174,772,374 | ||
| essv7028177 | Submitted genomic | NC_000003.10:g.(?_ 174730173)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,730,173 | 174,772,374 | ||
| essv7028178 | Submitted genomic | NC_000003.10:g.(?_ 174730173)_(174772 374_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 174,730,173 | 174,772,374 |