Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv2763733

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:195,432

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 916 SVs from 75 studies. See in: genome view

Remapped(Score: Good):5,214,484-5,409,915

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763733	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	5,214,484	5,409,915
esv2763733	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	5,256,169	5,451,601
esv2763733	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	5,231,169	5,426,601

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7024545	copy number gain	SW_1197	SNP array	SNP genotyping analysis	25
essv7024556	copy number loss	SW_0088	SNP array	SNP genotyping analysis	31
essv7024567	copy number loss	SW_0841	SNP array	SNP genotyping analysis	37

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7024545	Remapped	Good	NC_000003.12:g.(?_ 5214484)_(5409915_ ?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	5,214,484	5,409,915
essv7024556	Remapped	Good	NC_000003.12:g.(?_ 5347494)_(5394603_ ?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	5,347,494	5,394,603
essv7024567	Remapped	Good	NC_000003.12:g.(?_ 5347494)_(5394603_ ?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	5,347,494	5,394,603
essv7024545	Remapped	Perfect	NC_000003.11:g.(?_ 5256169)_(5451601_ ?)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	5,256,169	5,451,601
essv7024556	Remapped	Perfect	NC_000003.11:g.(?_ 5389179)_(5436289_ ?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	5,389,179	5,436,289
essv7024567	Remapped	Perfect	NC_000003.11:g.(?_ 5389179)_(5436289_ ?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	5,389,179	5,436,289
essv7024545	Submitted genomic		NC_000003.10:g.(?_ 5231169)_(5426601_ ?)dup	NCBI36 (hg18)		NC_000003.10	Chr3	5,231,169	5,426,601
essv7024556	Submitted genomic		NC_000003.10:g.(?_ 5364179)_(5411289_ ?)del	NCBI36 (hg18)		NC_000003.10	Chr3	5,364,179	5,411,289
essv7024567	Submitted genomic		NC_000003.10:g.(?_ 5364179)_(5411289_ ?)del	NCBI36 (hg18)		NC_000003.10	Chr3	5,364,179	5,411,289

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI