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dbVar

Database of genomic structural variation

esv2763734

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:10,770

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 218 SVs from 52 studies. See in: genome view

Remapped(Score: Perfect):112,383,718-112,394,487

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763734	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	112,383,718	112,394,487
esv2763734	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	112,102,565	112,113,334
esv2763734	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	113,585,255	113,596,024

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7027688	copy number loss	SW_0647	SNP array	SNP genotyping analysis	38
essv7027689	copy number loss	SW_0869	SNP array	SNP genotyping analysis	22
essv7027691	copy number loss	SW_1012	SNP array	SNP genotyping analysis	39

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7027688	Remapped	Perfect	NC_000003.12:g.(?_ 112383718)_(112394 487_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	112,383,718	112,394,487
essv7027689	Remapped	Perfect	NC_000003.12:g.(?_ 112383718)_(112394 487_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	112,383,718	112,394,487
essv7027691	Remapped	Perfect	NC_000003.12:g.(?_ 112383718)_(112394 487_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	112,383,718	112,394,487
essv7027688	Remapped	Perfect	NC_000003.11:g.(?_ 112102565)_(112113 334_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	112,102,565	112,113,334
essv7027689	Remapped	Perfect	NC_000003.11:g.(?_ 112102565)_(112113 334_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	112,102,565	112,113,334
essv7027691	Remapped	Perfect	NC_000003.11:g.(?_ 112102565)_(112113 334_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	112,102,565	112,113,334
essv7027688	Submitted genomic		NC_000003.10:g.(?_ 113585255)_(113596 024_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	113,585,255	113,596,024
essv7027689	Submitted genomic		NC_000003.10:g.(?_ 113585255)_(113596 024_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	113,585,255	113,596,024
essv7027691	Submitted genomic		NC_000003.10:g.(?_ 113585255)_(113596 024_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	113,585,255	113,596,024

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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