esv2763779
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:32,835
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 488 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 488 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 208 SVs from 20 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
esv2763779 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 8,783,681 | 8,816,515 |
esv2763779 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 8,825,367 | 8,858,201 |
esv2763779 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 8,800,367 | 8,833,201 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
essv7026144 | copy number gain | SW_0183 | SNP array | SNP genotyping analysis | 45 |
essv7026155 | copy number gain | SW_0628 | SNP array | SNP genotyping analysis | 42 |
essv7026166 | copy number gain | SW_0659 | SNP array | SNP genotyping analysis | 35 |
essv7026177 | copy number gain | SW_0791 | SNP array | SNP genotyping analysis | 38 |
essv7026189 | copy number gain | SW_1309 | SNP array | SNP genotyping analysis | 40 |
essv7026200 | copy number gain | SW_1337 | SNP array | SNP genotyping analysis | 23 |
essv7026211 | copy number gain | SW_1423 | SNP array | SNP genotyping analysis | 33 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
essv7026144 | Remapped | Perfect | NC_000003.12:g.(?_ 8783681)_(8816515_ ?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 8,783,681 | 8,816,515 |
essv7026155 | Remapped | Perfect | NC_000003.12:g.(?_ 8783681)_(8816515_ ?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 8,783,681 | 8,816,515 |
essv7026166 | Remapped | Perfect | NC_000003.12:g.(?_ 8783681)_(8816515_ ?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 8,783,681 | 8,816,515 |
essv7026177 | Remapped | Perfect | NC_000003.12:g.(?_ 8783681)_(8816515_ ?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 8,783,681 | 8,816,515 |
essv7026189 | Remapped | Perfect | NC_000003.12:g.(?_ 8783681)_(8816515_ ?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 8,783,681 | 8,816,515 |
essv7026200 | Remapped | Perfect | NC_000003.12:g.(?_ 8783681)_(8816515_ ?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 8,783,681 | 8,816,515 |
essv7026211 | Remapped | Perfect | NC_000003.12:g.(?_ 8784222)_(8816515_ ?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 8,784,222 | 8,816,515 |
essv7026144 | Remapped | Perfect | NC_000003.11:g.(?_ 8825367)_(8858201_ ?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 8,825,367 | 8,858,201 |
essv7026155 | Remapped | Perfect | NC_000003.11:g.(?_ 8825367)_(8858201_ ?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 8,825,367 | 8,858,201 |
essv7026166 | Remapped | Perfect | NC_000003.11:g.(?_ 8825367)_(8858201_ ?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 8,825,367 | 8,858,201 |
essv7026177 | Remapped | Perfect | NC_000003.11:g.(?_ 8825367)_(8858201_ ?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 8,825,367 | 8,858,201 |
essv7026189 | Remapped | Perfect | NC_000003.11:g.(?_ 8825367)_(8858201_ ?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 8,825,367 | 8,858,201 |
essv7026200 | Remapped | Perfect | NC_000003.11:g.(?_ 8825367)_(8858201_ ?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 8,825,367 | 8,858,201 |
essv7026211 | Remapped | Perfect | NC_000003.11:g.(?_ 8825908)_(8858201_ ?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 8,825,908 | 8,858,201 |
essv7026144 | Submitted genomic | NC_000003.10:g.(?_ 8800367)_(8833201_ ?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 8,800,367 | 8,833,201 | ||
essv7026155 | Submitted genomic | NC_000003.10:g.(?_ 8800367)_(8833201_ ?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 8,800,367 | 8,833,201 | ||
essv7026166 | Submitted genomic | NC_000003.10:g.(?_ 8800367)_(8833201_ ?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 8,800,367 | 8,833,201 | ||
essv7026177 | Submitted genomic | NC_000003.10:g.(?_ 8800367)_(8833201_ ?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 8,800,367 | 8,833,201 | ||
essv7026189 | Submitted genomic | NC_000003.10:g.(?_ 8800367)_(8833201_ ?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 8,800,367 | 8,833,201 | ||
essv7026200 | Submitted genomic | NC_000003.10:g.(?_ 8800367)_(8833201_ ?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 8,800,367 | 8,833,201 | ||
essv7026211 | Submitted genomic | NC_000003.10:g.(?_ 8800908)_(8833201_ ?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 8,800,908 | 8,833,201 |