esv2763791
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:3,384
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 261 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 261 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763791 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| esv2763791 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| esv2763791 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6994633 | copy number loss | SW_0158 | SNP array | SNP genotyping analysis | 50 |
| essv6994744 | copy number loss | SW_0255 | SNP array | SNP genotyping analysis | 31 |
| essv6994855 | copy number loss | SW_0634 | SNP array | SNP genotyping analysis | 49 |
| essv6994966 | copy number loss | SW_0691 | SNP array | SNP genotyping analysis | 39 |
| essv6995077 | copy number loss | SW_0847 | SNP array | SNP genotyping analysis | 49 |
| essv6995189 | copy number loss | SW_1171 | SNP array | SNP genotyping analysis | 49 |
| essv6995300 | copy number loss | SW_1355 | SNP array | SNP genotyping analysis | 37 |
| essv6995411 | copy number loss | SW_0008 | SNP array | SNP genotyping analysis | 47 |
| essv6995522 | copy number loss | SW_0009 | SNP array | SNP genotyping analysis | 48 |
| essv6995633 | copy number loss | SW_0173 | SNP array | SNP genotyping analysis | 53 |
| essv6995744 | copy number loss | SW_0215 | SNP array | SNP genotyping analysis | 36 |
| essv6995855 | copy number loss | SW_0888 | SNP array | SNP genotyping analysis | 49 |
| essv6995966 | copy number loss | SW_1038 | SNP array | SNP genotyping analysis | 28 |
| essv6996077 | copy number loss | SW_1126 | SNP array | SNP genotyping analysis | 46 |
| essv6996188 | copy number loss | SW_1148 | SNP array | SNP genotyping analysis | 39 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6994633 | Remapped | Perfect | NC_000001.11:g.(?_ 15825132)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| essv6994744 | Remapped | Perfect | NC_000001.11:g.(?_ 15825132)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| essv6994855 | Remapped | Perfect | NC_000001.11:g.(?_ 15825132)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| essv6994966 | Remapped | Perfect | NC_000001.11:g.(?_ 15825132)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| essv6995077 | Remapped | Perfect | NC_000001.11:g.(?_ 15825132)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| essv6995189 | Remapped | Perfect | NC_000001.11:g.(?_ 15825132)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| essv6995300 | Remapped | Perfect | NC_000001.11:g.(?_ 15825132)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,825,132 | 15,828,515 |
| essv6995411 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6995522 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6995633 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6995744 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6995855 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6995966 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6996077 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6996188 | Remapped | Perfect | NC_000001.11:g.(?_ 15827002)_(1582851 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,827,002 | 15,828,515 |
| essv6994633 | Remapped | Perfect | NC_000001.10:g.(?_ 16151627)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| essv6994744 | Remapped | Perfect | NC_000001.10:g.(?_ 16151627)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| essv6994855 | Remapped | Perfect | NC_000001.10:g.(?_ 16151627)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| essv6994966 | Remapped | Perfect | NC_000001.10:g.(?_ 16151627)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| essv6995077 | Remapped | Perfect | NC_000001.10:g.(?_ 16151627)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| essv6995189 | Remapped | Perfect | NC_000001.10:g.(?_ 16151627)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| essv6995300 | Remapped | Perfect | NC_000001.10:g.(?_ 16151627)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,151,627 | 16,155,010 |
| essv6995411 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6995522 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6995633 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6995744 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6995855 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6995966 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6996077 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6996188 | Remapped | Perfect | NC_000001.10:g.(?_ 16153497)_(1615501 0_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 16,153,497 | 16,155,010 |
| essv6994633 | Submitted genomic | NC_000001.9:g.(?_1 6024214)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 | ||
| essv6994744 | Submitted genomic | NC_000001.9:g.(?_1 6024214)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 | ||
| essv6994855 | Submitted genomic | NC_000001.9:g.(?_1 6024214)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 | ||
| essv6994966 | Submitted genomic | NC_000001.9:g.(?_1 6024214)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 | ||
| essv6995077 | Submitted genomic | NC_000001.9:g.(?_1 6024214)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 | ||
| essv6995189 | Submitted genomic | NC_000001.9:g.(?_1 6024214)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 | ||
| essv6995300 | Submitted genomic | NC_000001.9:g.(?_1 6024214)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,024,214 | 16,027,597 | ||
| essv6995411 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 | ||
| essv6995522 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 | ||
| essv6995633 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 | ||
| essv6995744 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 | ||
| essv6995855 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 | ||
| essv6995966 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 | ||
| essv6996077 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 | ||
| essv6996188 | Submitted genomic | NC_000001.9:g.(?_1 6026084)_(16027597 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 16,026,084 | 16,027,597 |