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dbVar

Database of genomic structural variation

esv2763871

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:28,950

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 414 SVs from 54 studies. See in: genome view

Remapped(Score: Perfect):104,971,560-105,000,509

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763871	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	104,971,560	105,000,509
esv2763871	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	104,307,261	104,336,210
esv2763871	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	104,335,160	104,364,109

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7031331	copy number loss	SW_0323	SNP array	SNP genotyping analysis	35
essv7031332	copy number loss	SW_0623	SNP array	SNP genotyping analysis	40

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7031331	Remapped	Perfect	NC_000005.10:g.(?_ 104971560)_(105000 509_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	104,971,560	105,000,509
essv7031332	Remapped	Perfect	NC_000005.10:g.(?_ 104971560)_(105000 509_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	104,971,560	105,000,509
essv7031331	Remapped	Perfect	NC_000005.9:g.(?_1 04307261)_(1043362 10_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	104,307,261	104,336,210
essv7031332	Remapped	Perfect	NC_000005.9:g.(?_1 04307261)_(1043362 10_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	104,307,261	104,336,210
essv7031331	Submitted genomic		NC_000005.8:g.(?_1 04335160)_(1043641 09_?)del	NCBI36 (hg18)		NC_000005.8	Chr5	104,335,160	104,364,109
essv7031332	Submitted genomic		NC_000005.8:g.(?_1 04335160)_(1043641 09_?)del	NCBI36 (hg18)		NC_000005.8	Chr5	104,335,160	104,364,109

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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