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dbVar

Database of genomic structural variation

esv2763910

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:35,430

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 302 SVs from 53 studies. See in: genome view

Remapped(Score: Perfect):113,580,701-113,616,130

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763910	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	113,580,701	113,616,130
esv2763910	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	112,916,398	112,951,827
esv2763910	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	112,944,297	112,979,726

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7031385	copy number gain	SW_1095	SNP array	SNP genotyping analysis	40
essv7031386	copy number loss	SW_0102	SNP array	SNP genotyping analysis	50

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7031385	Remapped	Perfect	NC_000005.10:g.(?_ 113580701)_(113610 295_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	113,580,701	113,610,295
essv7031386	Remapped	Perfect	NC_000005.10:g.(?_ 113602964)_(113616 130_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	113,602,964	113,616,130
essv7031385	Remapped	Perfect	NC_000005.9:g.(?_1 12916398)_(1129459 92_?)dup	GRCh37.p13	First Pass	NC_000005.9	Chr5	112,916,398	112,945,992
essv7031386	Remapped	Perfect	NC_000005.9:g.(?_1 12938661)_(1129518 27_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	112,938,661	112,951,827
essv7031385	Submitted genomic		NC_000005.8:g.(?_1 12944297)_(1129738 91_?)dup	NCBI36 (hg18)		NC_000005.8	Chr5	112,944,297	112,973,891
essv7031386	Submitted genomic		NC_000005.8:g.(?_1 12966560)_(1129797 26_?)del	NCBI36 (hg18)		NC_000005.8	Chr5	112,966,560	112,979,726

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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