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dbVar

Database of genomic structural variation

esv2763954

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:25,861

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 247 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):61,733,846-61,759,706

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763954	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	61,733,846	61,759,706
esv2763954	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	62,443,751	62,469,611
esv2763954	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	62,501,710	62,527,570

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7032125	copy number loss	SW_1149	SNP array	SNP genotyping analysis	34
essv7032126	copy number loss	SW_1506	SNP array	SNP genotyping analysis	27
essv7032127	copy number loss	SW_1131	SNP array	SNP genotyping analysis	31

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7032125	Remapped	Perfect	NC_000006.12:g.(?_ 61733846)_(6175240 2_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	61,733,846	61,752,402
essv7032126	Remapped	Perfect	NC_000006.12:g.(?_ 61733846)_(6175240 2_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	61,733,846	61,752,402
essv7032127	Remapped	Perfect	NC_000006.12:g.(?_ 61733846)_(6175970 6_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	61,733,846	61,759,706
essv7032125	Remapped	Perfect	NC_000006.11:g.(?_ 62443751)_(6246230 7_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	62,443,751	62,462,307
essv7032126	Remapped	Perfect	NC_000006.11:g.(?_ 62443751)_(6246230 7_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	62,443,751	62,462,307
essv7032127	Remapped	Perfect	NC_000006.11:g.(?_ 62443751)_(6246961 1_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	62,443,751	62,469,611
essv7032125	Submitted genomic		NC_000006.10:g.(?_ 62501710)_(6252026 6_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	62,501,710	62,520,266
essv7032126	Submitted genomic		NC_000006.10:g.(?_ 62501710)_(6252026 6_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	62,501,710	62,520,266
essv7032127	Submitted genomic		NC_000006.10:g.(?_ 62501710)_(6252757 0_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	62,501,710	62,527,570

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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