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dbVar

Database of genomic structural variation

esv2763961

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:10,882

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 336 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):76,307,183-76,318,064

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763961	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	76,307,183	76,318,064
esv2763961	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	77,016,900	77,027,781
esv2763961	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	77,073,620	77,084,501

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7032438	copy number loss	SW_1021	SNP array	SNP genotyping analysis	40
essv7032439	copy number loss	SW_0583	SNP array	SNP genotyping analysis	23
essv7032440	copy number loss	SW_0673	SNP array	SNP genotyping analysis	49

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7032438	Remapped	Perfect	NC_000006.12:g.(?_ 76307183)_(7631806 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	76,307,183	76,318,064
essv7032439	Remapped	Perfect	NC_000006.12:g.(?_ 76312261)_(7631806 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	76,312,261	76,318,064
essv7032440	Remapped	Perfect	NC_000006.12:g.(?_ 76312261)_(7631806 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	76,312,261	76,318,064
essv7032438	Remapped	Perfect	NC_000006.11:g.(?_ 77016900)_(7702778 1_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	77,016,900	77,027,781
essv7032439	Remapped	Perfect	NC_000006.11:g.(?_ 77021978)_(7702778 1_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	77,021,978	77,027,781
essv7032440	Remapped	Perfect	NC_000006.11:g.(?_ 77021978)_(7702778 1_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	77,021,978	77,027,781
essv7032438	Submitted genomic		NC_000006.10:g.(?_ 77073620)_(7708450 1_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	77,073,620	77,084,501
essv7032439	Submitted genomic		NC_000006.10:g.(?_ 77078698)_(7708450 1_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	77,078,698	77,084,501
essv7032440	Submitted genomic		NC_000006.10:g.(?_ 77078698)_(7708450 1_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	77,078,698	77,084,501

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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