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dbVar

Database of genomic structural variation

esv2764024

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:223,106

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 802 SVs from 69 studies. See in: genome view

Remapped(Score: Perfect):128,258,364-128,481,469

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2764024	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	128,258,364	128,481,469
esv2764024	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	130,056,628	130,279,733
esv2764024	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	129,946,618	130,169,723

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6995250	copy number gain	SW_1087	SNP array	SNP genotyping analysis	27
essv6995251	copy number loss	SW_0885	SNP array	SNP genotyping analysis	50

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6995250	Remapped	Perfect	NC_000010.11:g.(?_ 128258364)_(128481 469_?)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	128,258,364	128,481,469
essv6995251	Remapped	Perfect	NC_000010.11:g.(?_ 128414386)_(128421 449_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	128,414,386	128,421,449
essv6995250	Remapped	Perfect	NC_000010.10:g.(?_ 130056628)_(130279 733_?)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	130,056,628	130,279,733
essv6995251	Remapped	Perfect	NC_000010.10:g.(?_ 130212650)_(130219 713_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	130,212,650	130,219,713
essv6995250	Submitted genomic		NC_000010.9:g.(?_1 29946618)_(1301697 23_?)dup	NCBI36 (hg18)		NC_000010.9	Chr10	129,946,618	130,169,723
essv6995251	Submitted genomic		NC_000010.9:g.(?_1 30102640)_(1301097 03_?)del	NCBI36 (hg18)		NC_000010.9	Chr10	130,102,640	130,109,703

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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