esv2764029
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,652
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 184 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 61 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2764029 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| esv2764029 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| esv2764029 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6990942 | copy number loss | SW_0021 | SNP array | SNP genotyping analysis | 39 |
| essv6990943 | copy number loss | SW_0191 | SNP array | SNP genotyping analysis | 36 |
| essv6990944 | copy number loss | SW_0295 | SNP array | SNP genotyping analysis | 40 |
| essv6990946 | copy number loss | SW_0665 | SNP array | SNP genotyping analysis | 28 |
| essv6990947 | copy number loss | SW_1070 | SNP array | SNP genotyping analysis | 37 |
| essv6990948 | copy number loss | SW_1168 | SNP array | SNP genotyping analysis | 32 |
| essv6990949 | copy number loss | SW_1220 | SNP array | SNP genotyping analysis | 28 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6990942 | Remapped | Perfect | NC_000007.14:g.(?_ 88041426)_(8804307 7_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| essv6990943 | Remapped | Perfect | NC_000007.14:g.(?_ 88041426)_(8804307 7_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| essv6990944 | Remapped | Perfect | NC_000007.14:g.(?_ 88041426)_(8804307 7_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| essv6990946 | Remapped | Perfect | NC_000007.14:g.(?_ 88041426)_(8804307 7_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| essv6990947 | Remapped | Perfect | NC_000007.14:g.(?_ 88041426)_(8804307 7_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| essv6990948 | Remapped | Perfect | NC_000007.14:g.(?_ 88041426)_(8804307 7_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| essv6990949 | Remapped | Perfect | NC_000007.14:g.(?_ 88041426)_(8804307 7_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 88,041,426 | 88,043,077 |
| essv6990942 | Remapped | Perfect | NC_000007.13:g.(?_ 87670741)_(8767239 2_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| essv6990943 | Remapped | Perfect | NC_000007.13:g.(?_ 87670741)_(8767239 2_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| essv6990944 | Remapped | Perfect | NC_000007.13:g.(?_ 87670741)_(8767239 2_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| essv6990946 | Remapped | Perfect | NC_000007.13:g.(?_ 87670741)_(8767239 2_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| essv6990947 | Remapped | Perfect | NC_000007.13:g.(?_ 87670741)_(8767239 2_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| essv6990948 | Remapped | Perfect | NC_000007.13:g.(?_ 87670741)_(8767239 2_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| essv6990949 | Remapped | Perfect | NC_000007.13:g.(?_ 87670741)_(8767239 2_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 87,670,741 | 87,672,392 |
| essv6990942 | Submitted genomic | NC_000007.12:g.(?_ 87508677)_(8751032 8_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 | ||
| essv6990943 | Submitted genomic | NC_000007.12:g.(?_ 87508677)_(8751032 8_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 | ||
| essv6990944 | Submitted genomic | NC_000007.12:g.(?_ 87508677)_(8751032 8_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 | ||
| essv6990946 | Submitted genomic | NC_000007.12:g.(?_ 87508677)_(8751032 8_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 | ||
| essv6990947 | Submitted genomic | NC_000007.12:g.(?_ 87508677)_(8751032 8_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 | ||
| essv6990948 | Submitted genomic | NC_000007.12:g.(?_ 87508677)_(8751032 8_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 | ||
| essv6990949 | Submitted genomic | NC_000007.12:g.(?_ 87508677)_(8751032 8_?)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 87,508,677 | 87,510,328 |