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dbVar

Database of genomic structural variation

esv2764093

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:74,788

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 750 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):16,092,468-16,167,255

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2764093	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	16,092,468	16,167,255
esv2764093	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	15,949,977	16,024,764
esv2764093	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	15,994,348	16,069,135

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6992760	copy number loss	SW_0116	SNP array	SNP genotyping analysis	34
essv6992761	copy number loss	SW_1348	SNP array	SNP genotyping analysis	26
essv6992762	copy number loss	SW_1153	SNP array	SNP genotyping analysis	48
essv6992763	copy number gain	SW_1318	SNP array	SNP genotyping analysis	38
essv6992764	copy number loss	SW_1199	SNP array	SNP genotyping analysis	37

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6992760	Remapped	Perfect	NC_000008.11:g.(?_ 16092468)_(1616395 9_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	16,092,468	16,163,959
essv6992761	Remapped	Perfect	NC_000008.11:g.(?_ 16092468)_(1616395 9_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	16,092,468	16,163,959
essv6992762	Remapped	Perfect	NC_000008.11:g.(?_ 16092468)_(1616687 5_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	16,092,468	16,166,875
essv6992763	Remapped	Perfect	NC_000008.11:g.(?_ 16105571)_(1612751 9_?)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	16,105,571	16,127,519
essv6992764	Remapped	Perfect	NC_000008.11:g.(?_ 16163288)_(1616725 5_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	16,163,288	16,167,255
essv6992760	Remapped	Perfect	NC_000008.10:g.(?_ 15949977)_(1602146 8_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	15,949,977	16,021,468
essv6992761	Remapped	Perfect	NC_000008.10:g.(?_ 15949977)_(1602146 8_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	15,949,977	16,021,468
essv6992762	Remapped	Perfect	NC_000008.10:g.(?_ 15949977)_(1602438 4_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	15,949,977	16,024,384
essv6992763	Remapped	Perfect	NC_000008.10:g.(?_ 15963080)_(1598502 8_?)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	15,963,080	15,985,028
essv6992764	Remapped	Perfect	NC_000008.10:g.(?_ 16020797)_(1602476 4_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	16,020,797	16,024,764
essv6992760	Submitted genomic		NC_000008.9:g.(?_1 5994348)_(16065839 _?)del	NCBI36 (hg18)		NC_000008.9	Chr8	15,994,348	16,065,839
essv6992761	Submitted genomic		NC_000008.9:g.(?_1 5994348)_(16065839 _?)del	NCBI36 (hg18)		NC_000008.9	Chr8	15,994,348	16,065,839
essv6992762	Submitted genomic		NC_000008.9:g.(?_1 5994348)_(16068755 _?)del	NCBI36 (hg18)		NC_000008.9	Chr8	15,994,348	16,068,755
essv6992763	Submitted genomic		NC_000008.9:g.(?_1 6007451)_(16029399 _?)dup	NCBI36 (hg18)		NC_000008.9	Chr8	16,007,451	16,029,399
essv6992764	Submitted genomic		NC_000008.9:g.(?_1 6065168)_(16069135 _?)del	NCBI36 (hg18)		NC_000008.9	Chr8	16,065,168	16,069,135

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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