Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv2764158

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:23,714

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 628 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):122,574,497-122,598,210

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2764158	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	122,574,497	122,598,210
esv2764158	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	124,334,013	124,357,726
esv2764158	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	124,324,003	124,347,716

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6995239	copy number loss	SW_1175	SNP array	SNP genotyping analysis	45
essv6995240	copy number loss	SW_0158	SNP array	SNP genotyping analysis	50
essv6995241	copy number loss	SW_1171	SNP array	SNP genotyping analysis	49
essv6995242	copy number loss	SW_0817	SNP array	SNP genotyping analysis	27
essv6995243	copy number loss	SW_1068	SNP array	SNP genotyping analysis	44
essv6995244	copy number gain	SW_1435	SNP array	SNP genotyping analysis	32

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6995239	Remapped	Perfect	NC_000010.11:g.(?_ 122574497)_(122591 497_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	122,574,497	122,591,497
essv6995240	Remapped	Perfect	NC_000010.11:g.(?_ 122582018)_(122591 497_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	122,582,018	122,591,497
essv6995241	Remapped	Perfect	NC_000010.11:g.(?_ 122582018)_(122591 497_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	122,582,018	122,591,497
essv6995242	Remapped	Perfect	NC_000010.11:g.(?_ 122582018)_(122598 210_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	122,582,018	122,598,210
essv6995243	Remapped	Perfect	NC_000010.11:g.(?_ 122582018)_(122598 210_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	122,582,018	122,598,210
essv6995244	Remapped	Perfect	NC_000010.11:g.(?_ 122582018)_(122598 210_?)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	122,582,018	122,598,210
essv6995239	Remapped	Perfect	NC_000010.10:g.(?_ 124334013)_(124351 013_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	124,334,013	124,351,013
essv6995240	Remapped	Perfect	NC_000010.10:g.(?_ 124341534)_(124351 013_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	124,341,534	124,351,013
essv6995241	Remapped	Perfect	NC_000010.10:g.(?_ 124341534)_(124351 013_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	124,341,534	124,351,013
essv6995242	Remapped	Perfect	NC_000010.10:g.(?_ 124341534)_(124357 726_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	124,341,534	124,357,726
essv6995243	Remapped	Perfect	NC_000010.10:g.(?_ 124341534)_(124357 726_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	124,341,534	124,357,726
essv6995244	Remapped	Perfect	NC_000010.10:g.(?_ 124341534)_(124357 726_?)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	124,341,534	124,357,726
essv6995239	Submitted genomic		NC_000010.9:g.(?_1 24324003)_(1243410 03_?)del	NCBI36 (hg18)		NC_000010.9	Chr10	124,324,003	124,341,003
essv6995240	Submitted genomic		NC_000010.9:g.(?_1 24331524)_(1243410 03_?)del	NCBI36 (hg18)		NC_000010.9	Chr10	124,331,524	124,341,003
essv6995241	Submitted genomic		NC_000010.9:g.(?_1 24331524)_(1243410 03_?)del	NCBI36 (hg18)		NC_000010.9	Chr10	124,331,524	124,341,003
essv6995242	Submitted genomic		NC_000010.9:g.(?_1 24331524)_(1243477 16_?)del	NCBI36 (hg18)		NC_000010.9	Chr10	124,331,524	124,347,716
essv6995243	Submitted genomic		NC_000010.9:g.(?_1 24331524)_(1243477 16_?)del	NCBI36 (hg18)		NC_000010.9	Chr10	124,331,524	124,347,716
essv6995244	Submitted genomic		NC_000010.9:g.(?_1 24331524)_(1243477 16_?)dup	NCBI36 (hg18)		NC_000010.9	Chr10	124,331,524	124,347,716

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI