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dbVar

Database of genomic structural variation

esv2764228

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:57,484

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 267 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):13,986,779-14,044,262

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2764228	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	13,986,779	14,044,262
esv2764228	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	14,313,274	14,370,757
esv2764228	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	14,185,861	14,243,344

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7005006	copy number gain	RW_0186	SNP array	SNP genotyping analysis	74
essv7005007	copy number gain	RW_0292	SNP array	SNP genotyping analysis	43
essv7005008	copy number gain	RW_0330	SNP array	SNP genotyping analysis	52

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7005006	Remapped	Perfect	NC_000001.11:g.(?_ 13986779)_(1404426 2_?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	13,986,779	14,044,262
essv7005007	Remapped	Perfect	NC_000001.11:g.(?_ 13986779)_(1404426 2_?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	13,986,779	14,044,262
essv7005008	Remapped	Perfect	NC_000001.11:g.(?_ 13986779)_(1404426 2_?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	13,986,779	14,044,262
essv7005006	Remapped	Perfect	NC_000001.10:g.(?_ 14313274)_(1437075 7_?)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	14,313,274	14,370,757
essv7005007	Remapped	Perfect	NC_000001.10:g.(?_ 14313274)_(1437075 7_?)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	14,313,274	14,370,757
essv7005008	Remapped	Perfect	NC_000001.10:g.(?_ 14313274)_(1437075 7_?)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	14,313,274	14,370,757
essv7005006	Submitted genomic		NC_000001.9:g.(?_1 4185861)_(14243344 _?)dup	NCBI36 (hg18)		NC_000001.9	Chr1	14,185,861	14,243,344
essv7005007	Submitted genomic		NC_000001.9:g.(?_1 4185861)_(14243344 _?)dup	NCBI36 (hg18)		NC_000001.9	Chr1	14,185,861	14,243,344
essv7005008	Submitted genomic		NC_000001.9:g.(?_1 4185861)_(14243344 _?)dup	NCBI36 (hg18)		NC_000001.9	Chr1	14,185,861	14,243,344

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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