esv2830317
- Organism: Homo sapiens
- Study:estd206 (Nagirnaja et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35,623
- Description:FREQ_IN_CASES=2/43
- Publication(s):Nagirnaja et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 380 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 380 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 129 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2830317 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 165,324,003 | 165,359,625 |
| esv2830317 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 165,041,791 | 165,077,413 |
| esv2830317 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 166,524,485 | 166,560,107 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Copy number |
|---|---|---|---|---|---|
| essv7099022 | copy number loss | SNP array | Probe signal intensity | Recurrent miscarriage | 1 |
| essv7099023 | copy number loss | SNP array | Probe signal intensity | Recurrent miscarriage | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7099022 | Remapped | Perfect | NC_000003.12:g.(?_ 165324003)_(165359 625_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,324,003 | 165,359,625 |
| essv7099023 | Remapped | Perfect | NC_000003.12:g.(?_ 165324003)_(165359 625_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 165,324,003 | 165,359,625 |
| essv7099022 | Remapped | Perfect | NC_000003.11:g.(?_ 165041791)_(165077 413_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,041,791 | 165,077,413 |
| essv7099023 | Remapped | Perfect | NC_000003.11:g.(?_ 165041791)_(165077 413_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 165,041,791 | 165,077,413 |
| essv7099022 | Submitted genomic | NC_000003.10:g.(?_ 166524485)_(166560 107_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,524,485 | 166,560,107 | ||
| essv7099023 | Submitted genomic | NC_000003.10:g.(?_ 166524485)_(166560 107_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 166,524,485 | 166,560,107 |