esv2896
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,570
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 204 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 204 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 72 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2896 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 115,902,941 | 115,913,510 |
| esv2896 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 115,238,638 | 115,249,207 |
| esv2896 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 115,266,537 | 115,277,106 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv25337 | copy number loss | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25337 | Remapped | Perfect | NC_000005.10:g.(11 5902941_?)_(?_1159 13510)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,902,941 | 115,913,510 |
| essv25337 | Remapped | Perfect | NC_000005.9:g.(115 238638_?)_(?_11524 9207)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 115,238,638 | 115,249,207 |
| essv25337 | Submitted genomic | NC_000005.8:g.(115 266537_?)_(?_11527 7106)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 115,266,537 | 115,277,106 |