esv2946
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:94,326
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2930 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 1695 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 781 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 2930 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 1763 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 1396 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 1888 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv2946 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 31,260,502 | - | - | 31,354,827 |
| esv2946 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_7 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | - | 2,584,647 | - | 2,657,065 |
| esv2946 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_4 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 2,569,539 | - | 2,625,775 | - |
| esv2946 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 31,228,279 | - | - | 31,322,604 |
| esv2946 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_7 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | - | 2,583,945 | - | 2,656,363 |
| esv2946 | Remapped | Good | GRCh37.p13 | ALT_REF_LOCI_4 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 2,575,159 | - | - | 2,669,059 |
| esv2946 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 31,336,258 | - | - | 31,430,583 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv25387 | sequence alteration | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| essv25387 | Remapped | Pass | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 2,569,539 | - | 2,625,775 | - |
| essv25387 | Remapped | Pass | GRCh38.p12 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | - | 2,584,647 | - | 2,657,065 |
| essv25387 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 31,260,502 | - | - | 31,354,827 |
| essv25387 | Remapped | Good | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 2,575,159 | - | - | 2,669,059 |
| essv25387 | Remapped | Pass | GRCh37.p13 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | - | 2,583,945 | - | 2,656,363 |
| essv25387 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 31,228,279 | - | - | 31,322,604 |
| essv25387 | Submitted genomic | NCBI36 (hg18) | NC_000006.10 | Chr6 | 31,336,258 | - | - | 31,430,583 |