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dbVar

Database of genomic structural variation

esv29962

Organism: Homo sapiens

Study:estd22 (Levy et al. 2007)
Variant Type:copy number variation
Method Type:Oligo aCGH, SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:155,913

Publication(s):Levy et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3812 SVs from 103 studies. See in: genome view

Remapped(Score: Perfect):46,130,778-46,286,690

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv29962	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	46,130,778	46,286,690
esv29962	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000017.10	Chr17	44,223,908	44,364,056
esv29962	Remapped	Pass	GRCh37.p13	PATCHES	First Pass	NW_003871086.1	Chr17\|NW_0 03871086.1	253,400	349,823
esv29962	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000017.9	Chr17	41,563,921	41,719,833

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv84201	copy number loss	HuRef	Oligo aCGH, SNP array	Probe signal intensity, SNP genotyping analysis	780,358

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv84201	Remapped	Perfect	NC_000017.11:g.(?_ 46130778)_(4628669 0_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	46,130,778	46,286,690
essv84201	Remapped	Pass	NW_003871086.1:g.( ?_253400)_(349823_ ?)del	GRCh37.p13	First Pass	NW_003871086.1	Chr17\|NW_0 03871086.1	253,400	349,823
essv84201	Remapped	Pass	NC_000017.10:g.(?_ 44223908)_(4436405 6_?)del	GRCh37.p13	First Pass	NC_000017.10	Chr17	44,223,908	44,364,056
essv84201	Submitted genomic		NC_000017.9:g.(?_4 1563921)_(41719833 _?)del	NCBI36 (hg18)		NC_000017.9	Chr17	41,563,921	41,719,833

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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