esv3160
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:101,399
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1442 SVs from 102 studies. See in: genome view
Overlapping variant regions from other studies: 462 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 1442 SVs from 102 studies. See in: genome view
Overlapping variant regions from other studies: 462 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 512 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| esv3160 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 31,388,754 | - | 31,490,152 |
| esv3160 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_7 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 2,691,018 | 2,755,941 | - |
| esv3160 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 31,356,531 | - | 31,457,929 |
| esv3160 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_7 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 2,690,316 | 2,755,239 | - |
| esv3160 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 31,464,510 | - | 31,565,908 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv25601 | sequence alteration | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25601 | Remapped | Pass | GRCh38.p12 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 2,691,018 | 2,755,941 | - |
| essv25601 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 31,388,754 | - | 31,490,152 |
| essv25601 | Remapped | Pass | GRCh37.p13 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 2,690,316 | 2,755,239 | - |
| essv25601 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 31,356,531 | - | 31,457,929 |
| essv25601 | Submitted genomic | NCBI36 (hg18) | NC_000006.10 | Chr6 | 31,464,510 | - | 31,565,908 |