esv3310371
- Organism: Homo sapiens
- Study:estd59 (1000 Genomes Consortium Pilot Project)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):1000 Genomes Project Consortium et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 77 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 77 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 11 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3310371 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 132,148,101 (-25, +25) | 132,148,101 (-25, +25) |
| esv3310371 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 131,866,945 (-25, +25) | 131,866,945 (-25, +25) |
| esv3310371 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 133,349,635 (-25, +25) | 133,349,635 (-25, +25) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7836985 | mobile element insertion | SAMN00001695 | Sequencing | Paired-end mapping | 37,049 |
| essv7837483 | mobile element insertion | SAMN00001696 | Sequencing | Paired-end mapping | 44,056 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7836985 | Remapped | Perfect | NC_000003.12:g.(13 2148076_132148126) _(132148076_132148 126)ins162 | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 132,148,101 (-25, +25) | 132,148,101 (-25, +25) |
| essv7837483 | Remapped | Perfect | NC_000003.12:g.(13 2148076_132148126) _(132148076_132148 126)ins162 | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 132,148,101 (-25, +25) | 132,148,101 (-25, +25) |
| essv7836985 | Remapped | Perfect | NC_000003.11:g.(13 1866920_131866970) _(131866920_131866 970)ins162 | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 131,866,945 (-25, +25) | 131,866,945 (-25, +25) |
| essv7837483 | Remapped | Perfect | NC_000003.11:g.(13 1866920_131866970) _(131866920_131866 970)ins162 | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 131,866,945 (-25, +25) | 131,866,945 (-25, +25) |
| essv7836985 | Submitted genomic | NC_000003.10:g.(13 3349610_133349660) _(133349610_133349 660)ins162 | NCBI36 (hg18) | NC_000003.10 | Chr3 | 133,349,635 (-25, +25) | 133,349,635 (-25, +25) | ||
| essv7837483 | Submitted genomic | NC_000003.10:g.(13 3349610_133349660) _(133349610_133349 660)ins162 | NCBI36 (hg18) | NC_000003.10 | Chr3 | 133,349,635 (-25, +25) | 133,349,635 (-25, +25) |