esv3310416
- Organism: Homo sapiens
- Study:estd59 (1000 Genomes Consortium Pilot Project)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):1000 Genomes Project Consortium et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 139 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 35 SVs from 11 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
esv3310416 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 103,330,538 (-18, +18) | 103,330,538 (-18, +18) |
esv3310416 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 103,201,266 (-18, +18) | 103,201,266 (-18, +18) |
esv3310416 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 102,706,476 (-18, +18) | 102,706,476 (-18, +18) |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
essv7839983 | mobile element insertion | SAMN00801888 | Sequencing | Split read and paired-end mapping | 69,298 |
essv7840490 | mobile element insertion | SAMN00801912 | Sequencing | Split read and paired-end mapping | 25,841 |
essv7841432 | mobile element insertion | SAMN00801914 | Sequencing | Split read and paired-end mapping | 26,039 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
essv7839983 | Remapped | Perfect | NC_000011.10:g.(10 3330520_103330556) _(103330520_103330 556)ins301 | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 103,330,538 (-18, +18) | 103,330,538 (-18, +18) |
essv7840490 | Remapped | Perfect | NC_000011.10:g.(10 3330520_103330556) _(103330520_103330 556)ins301 | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 103,330,538 (-18, +18) | 103,330,538 (-18, +18) |
essv7841432 | Remapped | Perfect | NC_000011.10:g.(10 3330520_103330556) _(103330520_103330 556)ins301 | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 103,330,538 (-18, +18) | 103,330,538 (-18, +18) |
essv7839983 | Remapped | Perfect | NC_000011.9:g.(103 201248_103201284)_ (103201248_1032012 84)ins301 | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 103,201,266 (-18, +18) | 103,201,266 (-18, +18) |
essv7840490 | Remapped | Perfect | NC_000011.9:g.(103 201248_103201284)_ (103201248_1032012 84)ins301 | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 103,201,266 (-18, +18) | 103,201,266 (-18, +18) |
essv7841432 | Remapped | Perfect | NC_000011.9:g.(103 201248_103201284)_ (103201248_1032012 84)ins301 | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 103,201,266 (-18, +18) | 103,201,266 (-18, +18) |
essv7839983 | Submitted genomic | NC_000011.8:g.(102 706458_102706494)_ (102706458_1027064 94)ins301 | NCBI36 (hg18) | NC_000011.8 | Chr11 | 102,706,476 (-18, +18) | 102,706,476 (-18, +18) | ||
essv7840490 | Submitted genomic | NC_000011.8:g.(102 706458_102706494)_ (102706458_1027064 94)ins301 | NCBI36 (hg18) | NC_000011.8 | Chr11 | 102,706,476 (-18, +18) | 102,706,476 (-18, +18) | ||
essv7841432 | Submitted genomic | NC_000011.8:g.(102 706458_102706494)_ (102706458_1027064 94)ins301 | NCBI36 (hg18) | NC_000011.8 | Chr11 | 102,706,476 (-18, +18) | 102,706,476 (-18, +18) |