esv33110
- Organism: Homo sapiens
- Study:estd24 (de Smith et al. 2007)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:30,493
- Publication(s):de Smith et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1001 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 1005 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 25 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv33110 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,797,265 | 11,827,757 |
| esv33110 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,797,265 | 11,827,757 |
| esv33110 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000009.9 | Chr9 | 11,787,265 | 11,817,757 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv101374 | copy number loss | 21805 | Oligo aCGH | Probe signal intensity | 154 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv101374 | Remapped | Perfect | NC_000009.12:g.(11 794366_11797265)_( 11827757_11828118) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,794,366 | 11,797,265 | 11,827,757 | 11,828,118 |
| essv101374 | Remapped | Perfect | NC_000009.11:g.(11 794366_11797265)_( 11827757_11828118) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,794,366 | 11,797,265 | 11,827,757 | 11,828,118 |
| essv101374 | Submitted genomic | NC_000009.9:g.(117 84366_11787265)_(1 1817757_11818118)d el | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,784,366 | 11,787,265 | 11,817,757 | 11,818,118 |