esv33213
- Organism: Homo sapiens
- Study:estd24 (de Smith et al. 2007)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,846
- Publication(s):de Smith et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 285 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 285 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 5 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv33213 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 195,065,441 | 195,068,286 |
| esv33213 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 194,786,170 | 194,789,015 |
| esv33213 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000003.9 | Chr3 | 196,267,467 | 196,270,312 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv98085 | copy number loss | 22259 | Oligo aCGH | Probe signal intensity | 159 |
| essv101316 | copy number loss | 21805 | Oligo aCGH | Probe signal intensity | 154 |
| essv93709 | copy number loss | 21972 | Oligo aCGH | Probe signal intensity | 197 |
| essv95428 | copy number loss | 21847 | Oligo aCGH | Probe signal intensity | 152 |
| essv98159 | copy number loss | 21772 | Oligo aCGH | Probe signal intensity | 211 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv98085 | Remapped | Perfect | NC_000003.12:g.(19 5065176_195065441) _(195068090_195068 286)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 195,065,176 | 195,065,441 | 195,068,090 | 195,068,286 |
| essv101316 | Remapped | Perfect | NC_000003.12:g.(19 5065176_195065441) _(195068286_195068 498)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 195,065,176 | 195,065,441 | 195,068,286 | 195,068,498 |
| essv93709 | Remapped | Perfect | NC_000003.12:g.(19 5065176_195065441) _(195068286_195068 498)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 195,065,176 | 195,065,441 | 195,068,286 | 195,068,498 |
| essv95428 | Remapped | Perfect | NC_000003.12:g.(19 5067030_195068090) _(195068286_195068 498)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 195,067,030 | 195,068,090 | 195,068,286 | 195,068,498 |
| essv98159 | Remapped | Perfect | NC_000003.12:g.(19 5067030_195068090) _(195068286_195068 498)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 195,067,030 | 195,068,090 | 195,068,286 | 195,068,498 |
| essv98085 | Remapped | Perfect | NC_000003.11:g.(19 4785905_194786170) _(194788819_194789 015)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 194,785,905 | 194,786,170 | 194,788,819 | 194,789,015 |
| essv101316 | Remapped | Perfect | NC_000003.11:g.(19 4785905_194786170) _(194789015_194789 227)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 194,785,905 | 194,786,170 | 194,789,015 | 194,789,227 |
| essv93709 | Remapped | Perfect | NC_000003.11:g.(19 4785905_194786170) _(194789015_194789 227)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 194,785,905 | 194,786,170 | 194,789,015 | 194,789,227 |
| essv95428 | Remapped | Perfect | NC_000003.11:g.(19 4787759_194788819) _(194789015_194789 227)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 194,787,759 | 194,788,819 | 194,789,015 | 194,789,227 |
| essv98159 | Remapped | Perfect | NC_000003.11:g.(19 4787759_194788819) _(194789015_194789 227)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 194,787,759 | 194,788,819 | 194,789,015 | 194,789,227 |
| essv98085 | Submitted genomic | NC_000003.9:g.(196 267202_196267467)_ (196270116_1962703 12)del | NCBI35 (hg17) | NC_000003.9 | Chr3 | 196,267,202 | 196,267,467 | 196,270,116 | 196,270,312 | ||
| essv101316 | Submitted genomic | NC_000003.9:g.(196 267202_196267467)_ (196270312_1962705 24)del | NCBI35 (hg17) | NC_000003.9 | Chr3 | 196,267,202 | 196,267,467 | 196,270,312 | 196,270,524 | ||
| essv93709 | Submitted genomic | NC_000003.9:g.(196 267202_196267467)_ (196270312_1962705 24)del | NCBI35 (hg17) | NC_000003.9 | Chr3 | 196,267,202 | 196,267,467 | 196,270,312 | 196,270,524 | ||
| essv95428 | Submitted genomic | NC_000003.9:g.(196 269056_196270116)_ (196270312_1962705 24)del | NCBI35 (hg17) | NC_000003.9 | Chr3 | 196,269,056 | 196,270,116 | 196,270,312 | 196,270,524 | ||
| essv98159 | Submitted genomic | NC_000003.9:g.(196 269056_196270116)_ (196270312_1962705 24)del | NCBI35 (hg17) | NC_000003.9 | Chr3 | 196,269,056 | 196,270,116 | 196,270,312 | 196,270,524 |