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dbVar

Database of genomic structural variation

esv33504

Organism: Homo sapiens

Study:estd24 (de Smith et al. 2007)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:66,904

Publication(s):de Smith et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 822 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):105,097,970-105,164,873

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv33504	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	105,097,970	105,164,873
esv33504	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	104,433,671	104,500,574
esv33504	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000005.8	Chr5	104,461,570	104,528,473

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv92974	copy number loss	21939	Oligo aCGH	Probe signal intensity	168
essv93708	copy number loss	21972	Oligo aCGH	Probe signal intensity	197

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
essv92974	Remapped	Perfect	NC_000005.10:g.(10 5088690_105097970) _(105164873_105169 999)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	105,088,690	105,097,970	105,164,873	105,169,999
essv93708	Remapped	Perfect	NC_000005.10:g.(10 5088690_105097970) _(105164873_105169 999)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	105,088,690	105,097,970	105,164,873	105,169,999
essv92974	Remapped	Perfect	NC_000005.9:g.(104 424391_104433671)_ (104500574_1045057 00)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	104,424,391	104,433,671	104,500,574	104,505,700
essv93708	Remapped	Perfect	NC_000005.9:g.(104 424391_104433671)_ (104500574_1045057 00)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	104,424,391	104,433,671	104,500,574	104,505,700
essv92974	Submitted genomic		NC_000005.8:g.(104 452290_104461570)_ (104528473_1045335 99)del	NCBI35 (hg17)		NC_000005.8	Chr5	104,452,290	104,461,570	104,528,473	104,533,599
essv93708	Submitted genomic		NC_000005.8:g.(104 452290_104461570)_ (104528473_1045335 99)del	NCBI35 (hg17)		NC_000005.8	Chr5	104,452,290	104,461,570	104,528,473	104,533,599

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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