esv3355
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:88,023
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 968 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 729 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 263 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 449 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| esv3355 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 137,592 | - | 225,614 |
| esv3355 | Remapped | Pass | GRCh37.p13 | Primary Assembly | Second Pass | NC_000004.11 | Chr4 | - | 160,648 | 219,403 |
| esv3355 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_004775427.1 | Chr4|NW_00 4775427.1 | - | 156,859 | 215,614 |
| esv3355 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 121,373 | - | 209,403 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv25796 | sequence alteration | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25796 | Remapped | Good | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 137,592 | - | 225,614 |
| essv25796 | Remapped | Pass | GRCh37.p13 | First Pass | NW_004775427.1 | Chr4|NW_00 4775427.1 | - | 156,859 | 215,614 |
| essv25796 | Remapped | Pass | GRCh37.p13 | Second Pass | NC_000004.11 | Chr4 | - | 160,648 | 219,403 |
| essv25796 | Submitted genomic | NCBI36 (hg18) | NC_000004.10 | Chr4 | 121,373 | - | 209,403 |