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dbVar

Database of genomic structural variation

esv33845

Organism: Homo sapiens

Study:estd24 (de Smith et al. 2007)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:45,719

Publication(s):de Smith et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 828 SVs from 77 studies. See in: genome view

Remapped(Score: Perfect):97,712,227-97,757,945

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv33845	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	97,712,227	97,757,945
esv33845	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	97,047,931	97,093,649
esv33845	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000005.8	Chr5	97,073,687	97,119,405

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv101650	copy number loss	21909	Oligo aCGH	Probe signal intensity	171
essv93571	copy number loss	22128	Oligo aCGH	Probe signal intensity	178
essv98230	copy number loss	21772	Oligo aCGH	Probe signal intensity	211

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
essv101650	Remapped	Perfect	NC_000005.10:g.(97 696103_97712227)_( 97757945_97765487) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	97,696,103	97,712,227	97,757,945	97,765,487
essv93571	Remapped	Perfect	NC_000005.10:g.(97 696103_97712227)_( 97757945_97765487) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	97,696,103	97,712,227	97,757,945	97,765,487
essv98230	Remapped	Perfect	NC_000005.10:g.(97 696103_97712227)_( 97757945_97765487) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	97,696,103	97,712,227	97,757,945	97,765,487
essv101650	Remapped	Perfect	NC_000005.9:g.(970 31807_97047931)_(9 7093649_97101191)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	97,031,807	97,047,931	97,093,649	97,101,191
essv93571	Remapped	Perfect	NC_000005.9:g.(970 31807_97047931)_(9 7093649_97101191)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	97,031,807	97,047,931	97,093,649	97,101,191
essv98230	Remapped	Perfect	NC_000005.9:g.(970 31807_97047931)_(9 7093649_97101191)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	97,031,807	97,047,931	97,093,649	97,101,191
essv101650	Submitted genomic		NC_000005.8:g.(970 57563_97073687)_(9 7119405_97126947)d el	NCBI35 (hg17)		NC_000005.8	Chr5	97,057,563	97,073,687	97,119,405	97,126,947
essv93571	Submitted genomic		NC_000005.8:g.(970 57563_97073687)_(9 7119405_97126947)d el	NCBI35 (hg17)		NC_000005.8	Chr5	97,057,563	97,073,687	97,119,405	97,126,947
essv98230	Submitted genomic		NC_000005.8:g.(970 57563_97073687)_(9 7119405_97126947)d el	NCBI35 (hg17)		NC_000005.8	Chr5	97,057,563	97,073,687	97,119,405	97,126,947

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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