esv33883
- Organism: Homo sapiens
- Study:estd24 (de Smith et al. 2007)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,116
- Publication(s):de Smith et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 101 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 101 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 2 SVs from 2 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv33883 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 78,677,719 | 78,688,834 |
| esv33883 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 78,388,764 | 78,399,879 |
| esv33883 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000011.8 | Chr11 | 78,066,412 | 78,077,527 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv94948 | copy number loss | 22231 | Oligo aCGH | Probe signal intensity | 206 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv94948 | Remapped | Perfect | NC_000011.10:g.(78 673818_78677719)_( 78688834_78693650) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 78,673,818 | 78,677,719 | 78,688,834 | 78,693,650 |
| essv94948 | Remapped | Perfect | NC_000011.9:g.(783 84863_78388764)_(7 8399879_78404695)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 78,384,863 | 78,388,764 | 78,399,879 | 78,404,695 |
| essv94948 | Submitted genomic | NC_000011.8:g.(780 62511_78066412)_(7 8077527_78082343)d el | NCBI35 (hg17) | NC_000011.8 | Chr11 | 78,062,511 | 78,066,412 | 78,077,527 | 78,082,343 |