esv33981
- Organism: Homo sapiens
- Study:estd24 (de Smith et al. 2007)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:59,683
- Publication(s):de Smith et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 672 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 672 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 16 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv33981 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 41,141,053 | 41,200,735 |
| esv33981 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 41,610,256 | 41,669,938 |
| esv33981 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000014.7 | Chr14 | 40,680,006 | 40,739,688 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv92975 | copy number loss | 21939 | Oligo aCGH | Probe signal intensity | 168 |
| essv93007 | copy number loss | 21863 | Oligo aCGH | Probe signal intensity | 176 |
| essv95214 | copy number loss | 21721 | Oligo aCGH | Probe signal intensity | 184 |
| essv96002 | copy number loss | 22127 | Oligo aCGH | Probe signal intensity | 152 |
| essv96082 | copy number loss | 22007 | Oligo aCGH | Probe signal intensity | 166 |
| essv96448 | copy number loss | 22261 | Oligo aCGH | Probe signal intensity | 154 |
| essv96723 | copy number loss | 22011 | Oligo aCGH | Probe signal intensity | 172 |
| essv96828 | copy number loss | 21659 | Oligo aCGH | Probe signal intensity | 128 |
| essv97043 | copy number loss | 21817 | Oligo aCGH | Probe signal intensity | 201 |
| essv98028 | copy number loss | 22259 | Oligo aCGH | Probe signal intensity | 159 |
| essv98304 | copy number loss | 21772 | Oligo aCGH | Probe signal intensity | 211 |
| essv98609 | copy number loss | 22085 | Oligo aCGH | Probe signal intensity | 128 |
| essv99038 | copy number loss | 21938 | Oligo aCGH | Probe signal intensity | 201 |
| essv98874 | copy number loss | 21606 | Oligo aCGH | Probe signal intensity | 282 |
| essv100405 | copy number loss | 22300 | Oligo aCGH | Probe signal intensity | 163 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv92975 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv93007 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv95214 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv96002 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv96082 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv96448 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv96723 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv96828 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv97043 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv98028 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv98304 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv98609 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv99038 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,308 | 41,200,735 |
| essv98874 | Remapped | Perfect | NC_000014.9:g.(411 38457_41141053)_(4 1200735_41200862)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,138,457 | 41,141,053 | 41,200,735 | 41,200,862 |
| essv100405 | Remapped | Perfect | NC_000014.9:g.(411 41053_41141665)_(4 1200308_41200735)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,141,053 | 41,141,665 | 41,200,308 | 41,200,735 |
| essv92975 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv93007 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv95214 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv96002 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv96082 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv96448 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv96723 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv96828 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv97043 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv98028 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv98304 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv98609 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv99038 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,511 | 41,669,938 |
| essv98874 | Remapped | Perfect | NC_000014.8:g.(416 07660_41610256)_(4 1669938_41670065)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,607,660 | 41,610,256 | 41,669,938 | 41,670,065 |
| essv100405 | Remapped | Perfect | NC_000014.8:g.(416 10256_41610868)_(4 1669511_41669938)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,610,256 | 41,610,868 | 41,669,511 | 41,669,938 |
| essv92975 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv93007 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv95214 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv96002 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv96082 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv96448 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv96723 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv96828 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv97043 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv98028 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv98304 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv98609 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv99038 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,261 | 40,739,688 | ||
| essv98874 | Submitted genomic | NC_000014.7:g.(406 77410_40680006)_(4 0739688_40739815)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,677,410 | 40,680,006 | 40,739,688 | 40,739,815 | ||
| essv100405 | Submitted genomic | NC_000014.7:g.(406 80006_40680618)_(4 0739261_40739688)d el | NCBI35 (hg17) | NC_000014.7 | Chr14 | 40,680,006 | 40,680,618 | 40,739,261 | 40,739,688 |