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dbVar

Database of genomic structural variation

esv34791

Organism: Homo sapiens

Study:estd55 (Pinto et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:344,935

Description:Sample level SV from stringent call set
Publication(s):Pinto et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 4167 SVs from 106 studies. See in: genome view

Remapped(Score: Perfect):11,837,866-12,182,800

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv34791	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	11,837,866	12,182,800
esv34791	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	11,837,866	12,182,800
esv34791	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000009.9	Chr9	11,827,866	12,172,800

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6980608	copy number loss	NA19222	SNP array	SNP genotyping analysis	12
essv6987823	copy number loss	NA19222	SNP array	SNP genotyping analysis	12
essv6980609	copy number loss	NA19222	SNP array	SNP genotyping analysis	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6980608	Remapped	Perfect	NC_000009.12:g.(?_ 11837866)_(1218276 8_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	11,837,866	12,182,768
essv6987823	Remapped	Perfect	NC_000009.12:g.(?_ 11913200)_(1218280 0_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	11,913,200	12,182,800
essv6980609	Remapped	Perfect	NC_000009.12:g.(?_ 11967011)_(1218276 8_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	11,967,011	12,182,768
essv6980608	Remapped	Perfect	NC_000009.11:g.(?_ 11837866)_(1218276 8_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	11,837,866	12,182,768
essv6987823	Remapped	Perfect	NC_000009.11:g.(?_ 11913200)_(1218280 0_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	11,913,200	12,182,800
essv6980609	Remapped	Perfect	NC_000009.11:g.(?_ 11967011)_(1218276 8_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	11,967,011	12,182,768
essv6980608	Submitted genomic		NC_000009.9:g.(?_1 1827866)_(12172768 _?)del	NCBI35 (hg17)		NC_000009.9	Chr9	11,827,866	12,172,768
essv6987823	Submitted genomic		NC_000009.9:g.(?_1 1903200)_(12172800 _?)del	NCBI35 (hg17)		NC_000009.9	Chr9	11,903,200	12,172,800
essv6980609	Submitted genomic		NC_000009.9:g.(?_1 1957011)_(12172768 _?)del	NCBI35 (hg17)		NC_000009.9	Chr9	11,957,011	12,172,768

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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