esv3584623
- Organism: Homo sapiens
- Study:estd213 (Mokhtar et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,124
- Publication(s):Mokhtar et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 275 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 275 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3584623 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 89,183,210 | 89,188,333 |
| esv3584623 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 90,942,967 | 90,948,090 |
| esv3584623 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 90,932,947 | 90,938,070 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv9838028 | copy number loss | OA003 | SNP array | Probe signal intensity | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv9838028 | Remapped | Perfect | NC_000010.11:g.(?_ 89183210)_(8918833 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 89,183,210 | 89,188,333 |
| essv9838028 | Remapped | Perfect | NC_000010.10:g.(?_ 90942967)_(9094809 0_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 90,942,967 | 90,948,090 |
| essv9838028 | Submitted genomic | NC_000010.9:g.(?_9 0932947)_(90938070 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 90,932,947 | 90,938,070 |