esv3584682
- Organism: Homo sapiens
- Study:estd213 (Mokhtar et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35,709
- Publication(s):Mokhtar et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1675 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 1675 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 778 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3584682 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 24,233,617 | 24,269,325 |
| esv3584682 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 24,478,764 | 24,514,472 |
| esv3584682 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 22,029,857 | 22,065,565 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv9838582 | copy number loss | KSM008 | SNP array | Probe signal intensity | 54 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv9838582 | Remapped | Perfect | NC_000015.10:g.(?_ 24233617)_(2426932 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,233,617 | 24,269,325 |
| essv9838582 | Remapped | Perfect | NC_000015.9:g.(?_2 4478764)_(24514472 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,478,764 | 24,514,472 |
| essv9838582 | Submitted genomic | NC_000015.8:g.(?_2 2029857)_(22065565 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 22,029,857 | 22,065,565 |