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dbVar

Database of genomic structural variation

esv3645714

Organism: Homo sapiens

Study:estd214 (1000 Genomes Consortium Phase 3)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):1000 Genomes Project Consortium et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 141 SVs from 20 studies. See in: genome view

Remapped(Score: Perfect):35,289,515-35,289,515

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3645714	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
esv3645714	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000020.10	Chr20	33,877,318	33,877,318

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv16178648	sva insertion	SAMN00779930	Sequencing	Read depth and paired-end mapping	Heterozygous	3,244
essv16178649	sva insertion	SAMN01036795	Sequencing	Read depth and paired-end mapping	Heterozygous	3,333
essv16178650	sva insertion	SAMN01036801	Sequencing	Read depth and paired-end mapping	Heterozygous	3,103
essv16178651	sva insertion	SAMN01761234	Sequencing	Read depth and paired-end mapping	Heterozygous	3,228
essv16178652	sva insertion	SAMN01761243	Sequencing	Read depth and paired-end mapping	Heterozygous	3,270
essv16178653	sva insertion	SAMN00000475	Sequencing	Read depth and paired-end mapping	Heterozygous	3,336
essv16178654	sva insertion	SAMN00000477	Sequencing	Read depth and paired-end mapping	Heterozygous	3,404
essv16178655	sva insertion	SAMN00001629	Sequencing	Read depth and paired-end mapping	Heterozygous	3,357

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv16178648	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178649	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178650	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178651	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178652	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178653	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178654	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178655	Remapped	Perfect	NC_000020.11:g.352 89515_35289516ins?	GRCh38.p12	First Pass	NC_000020.11	Chr20	35,289,515	35,289,515
essv16178648	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318
essv16178649	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318
essv16178650	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318
essv16178651	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318
essv16178652	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318
essv16178653	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318
essv16178654	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318
essv16178655	Submitted genomic		NC_000020.10:g.338 77318_33877319ins?	GRCh37 (hg19)		NC_000020.10	Chr20	33,877,318	33,877,318

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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