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dbVar

Database of genomic structural variation

esv3647776

Organism: Homo sapiens

Study:estd214 (1000 Genomes Consortium Phase 3)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):1000 Genomes Project Consortium et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view

Remapped(Score: Perfect):40,463,043-40,463,043

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3647776	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	40,463,043	40,463,043
esv3647776	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000022.10	Chr22	40,859,047	40,859,047

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv16430023	alu insertion	SAMN00007904	Sequencing	Read depth and paired-end mapping	Heterozygous	2,791

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv16430023	Remapped	Perfect	NC_000022.11:g.404 63043_40463044ins?	GRCh38.p12	First Pass	NC_000022.11	Chr22	40,463,043	40,463,043
essv16430023	Submitted genomic		NC_000022.10:g.408 59047_40859048ins?	GRCh37 (hg19)		NC_000022.10	Chr22	40,859,047	40,859,047

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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