esv3648189
- Organism: Homo sapiens
- Study:estd216 (Kasak et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:82,453
- Description:PLEASE NOTE: The calls represented in this region now have equivalents in the study Clinical Structural Variants (nstd102). Please use the preferred nstd102 variant region accession for this variant; you can find it at top right under "Links to Other Resources" or in the mapping file provided here.
- Publication(s):Kasak et al. 2015
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 288 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 288 SVs from 54 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3648189 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 96,387,763 | 96,470,215 |
| esv3648189 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 97,308,914 | 97,391,366 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|
| essv16462587 | deletion | SNP array | Probe signal intensity | not provided | ClinVar | SCV000191309 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv16462587 | Remapped | Perfect | NC_000004.12:g.(96 387763_?)_(?_96470 215)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 96,387,763 | 96,470,215 |
| essv16462587 | Submitted genomic | NC_000004.11:g.(97 308914_?)_(?_97391 366)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 97,308,914 | 97,391,366 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|
| essv16462587 | GRCh37: NC_000004.11:g.(97308914_?)_(?_97391366)del | deletion | not provided | ClinVar | SCV000191309 |