esv3648846
- Organism: Homo sapiens
- Study:estd216 (Kasak et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:119,817
- Description:PLEASE NOTE: The calls represented in this region now have equivalents in the study Clinical Structural Variants (nstd102). Please use the preferred nstd102 variant region accession for this variant; you can find it at top right under "Links to Other Resources" or in the mapping file provided here.
- Publication(s):Kasak et al. 2015
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1002 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 345 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 1002 SVs from 79 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| esv3648846 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 1,725,757 | - | 1,841,468 |
| esv3648846 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | - | 1 | 119,817 |
| esv3648846 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 1,725,758 | - | 1,841,469 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|
| essv16463179 | deletion | SNP array | Probe signal intensity | not provided | ClinVar | SCV000191790 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| essv16463179 | Remapped | Good | NW_019805503.1:g.( ?_1)_(?_119817)del | GRCh38.p12 | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | - | 1 | 119,817 |
| essv16463179 | Remapped | Perfect | NC_000018.10:g.(17 25757_?)_(?_184146 8)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 1,725,757 | - | 1,841,468 |
| essv16463179 | Submitted genomic | NC_000018.9:g.(172 5758_?)_(?_1841469 )del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 1,725,758 | - | 1,841,469 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|
| essv16463179 | GRCh37: NC_000018.9:g.(1725758_?)_(?_1841469)del | deletion | not provided | ClinVar | SCV000191790 |