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dbVar

Database of genomic structural variation

esv3691625

Organism: Homo sapiens

Study:estd220 (Pettigrew et al. 2015)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:216,571

Publication(s):Pettigrew et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 659 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):39,162,506-39,379,076

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
esv3691625	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	39,162,506	39,162,506	39,264,493	39,379,076
esv3691625	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	39,184,056	39,184,056	39,286,043	39,400,626

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv16505932	duplication	FR-31	SNP array	SNP genotyping analysis	42

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
essv16505932	Remapped	Perfect	NC_000011.10:g.(39 162506_39162506)_( 39264493_39379076) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	39,162,506	39,162,506	39,264,493	39,379,076
essv16505932	Submitted genomic		NC_000011.9:g.(391 84056_39184056)_(3 9286043_39400626)d up169156	GRCh37 (hg19)		NC_000011.9	Chr11	39,184,056	39,184,056	39,286,043	39,400,626

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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