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dbVar

Database of genomic structural variation

esv3799591

Organism: Homo sapiens

Study:estd192 (COSMIC)
Variant Type:complex chromosomal rearrangement
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:401

Description:
Chr1:g.(89796783_89797183)_chr1:o(89833272_89833672)bkpt
Publication(s):Forbes et al. 2008, Forbes et al. 2008, Stephens et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 66 SVs from 26 studies. See in: genome view

Remapped(Score: Perfect):89,331,100-89,331,500

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop	strand
esv3799591	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	89,331,100	89,331,500	89,331,100	89,331,500
esv3799591	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	89,367,713	89,368,113	89,367,713	89,368,113	-
esv3799591	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	89,796,783	89,797,183	89,796,783	89,797,183
esv3799591	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	89,833,272	89,833,672	89,833,272	89,833,672	-

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv16627634	intrachromosomal translocation	749709	Curated	Curated	261

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop	strand
essv16627634	Remapped	Perfect	GRCh38.p12	First Pass	NC_000001.11	Chr1	89,331,100	89,331,500	89,331,100	89,331,500	not reported
essv16627634	Remapped	Perfect	GRCh38.p12	First Pass	NC_000001.11	Chr1	89,367,713	89,368,113	89,367,713	89,368,113	-
essv16627634	Submitted genomic		GRCh37 (hg19)		NC_000001.10	Chr1	89,796,783	89,797,183	89,796,783	89,797,183	not reported
essv16627634	Submitted genomic		GRCh37 (hg19)		NC_000001.10	Chr1	89,833,272	89,833,672	89,833,272	89,833,672	-

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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