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dbVar

Database of genomic structural variation

esv3800766

Organism: Homo sapiens

Study:estd192 (COSMIC)
Variant Type:complex chromosomal rearrangement
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:401

Description:
Chr4:g.o(90783730_90784130)_chr4:o(91229763_91230163)bkpt
Publication(s):Forbes et al. 2008, Forbes et al. 2008, Stephens et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 108 SVs from 28 studies. See in: genome view

Remapped(Score: Perfect):89,862,579-89,862,979

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop	strand
esv3800766	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	89,862,579	89,862,979	89,862,579	89,862,979	-
esv3800766	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	90,308,612	90,309,012	90,308,612	90,309,012	-
esv3800766	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	90,783,730	90,784,130	90,783,730	90,784,130	-
esv3800766	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	91,229,763	91,230,163	91,229,763	91,230,163	-

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv16628949	intrachromosomal translocation	1126528	Curated	Curated	7

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop	strand
essv16628949	Remapped	Perfect	GRCh38.p12	First Pass	NC_000004.12	Chr4	89,862,579	89,862,979	89,862,579	89,862,979	-
essv16628949	Remapped	Perfect	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,308,612	90,309,012	90,308,612	90,309,012	-
essv16628949	Submitted genomic		GRCh37 (hg19)		NC_000004.11	Chr4	90,783,730	90,784,130	90,783,730	90,784,130	-
essv16628949	Submitted genomic		GRCh37 (hg19)		NC_000004.11	Chr4	91,229,763	91,230,163	91,229,763	91,230,163	-

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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