Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv3812396

Organism: Homo sapiens

Study:estd192 (COSMIC)
Variant Type:complex chromosomal rearrangement
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,002

Description:Chr1:g.(156544770_156546770)_chr10:(89628419_8
9630419)bkpt
Publication(s):Forbes et al. 2008, Forbes et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 76 SVs from 22 studies. See in: genome view

Remapped(Score: Perfect):156,574,978-156,576,978

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
esv3812396	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	156,574,978	156,576,978	156,574,978	156,576,978
esv3812396	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	87,868,662	87,870,662	87,868,662	87,870,662
esv3812396	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_013171807.1	Chr10\|NW_0 13171807.1	84,485	84,485	86,486	86,486
esv3812396	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	156,544,770	156,546,770	156,544,770	156,546,770
esv3812396	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000010.10	Chr10	89,628,419	89,630,419	89,628,419	89,630,419

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv16641951	interchromosomal translocation	2120209	Curated	Curated	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop	strand
essv16641951	Remapped	Perfect	GRCh38.p12	First Pass	NC_000001.11	Chr1	156,574,978	156,576,978	156,574,978	156,576,978	not reported
essv16641951	Remapped	Good	GRCh38.p12	Second Pass	NW_013171807.1	Chr10\|NW_0 13171807.1	84,485	84,485	86,486	86,486	not reported
essv16641951	Remapped	Perfect	GRCh38.p12	First Pass	NC_000010.11	Chr10	87,868,662	87,870,662	87,868,662	87,870,662	not reported
essv16641951	Submitted genomic		GRCh37 (hg19)		NC_000001.10	Chr1	156,544,770	156,546,770	156,544,770	156,546,770	not reported
essv16641951	Submitted genomic		GRCh37 (hg19)		NC_000010.10	Chr10	89,628,419	89,630,419	89,628,419	89,630,419	not reported

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI