esv3890407

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:29
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 431 SVs from 22 studies. See in: genome view

Remapped(Score: Perfect):152,663,306-152,663,306

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3890407	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
esv3890407	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	151,831,777	151,831,777

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv25715610	alu insertion	HG01365	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,642
essv25715611	alu insertion	HG01889	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,246
essv25715612	alu insertion	HG02052	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,882
essv25715613	alu insertion	HG02325	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,782
essv25715614	alu insertion	HG02445	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,202
essv25715615	alu insertion	HG02546	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,489
essv25715616	alu insertion	HG02558	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,484
essv25715617	alu insertion	HG02757	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,898
essv25715618	alu insertion	HG02772	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,888
essv25715619	alu insertion	HG02808	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,842
essv25715620	alu insertion	HG02811	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,314
essv25715621	alu insertion	HG02840	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,650
essv25715622	alu insertion	HG02888	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,709
essv25715623	alu insertion	HG02922	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,081
essv25715624	alu insertion	HG02946	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,645
essv25715625	alu insertion	HG02970	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,596
essv25715626	alu insertion	HG03085	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,941
essv25715627	alu insertion	HG03126	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,992
essv25715628	alu insertion	HG03127	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,354
essv25715629	alu insertion	HG03209	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,957
essv25715630	alu insertion	HG03476	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,858
essv25715631	alu insertion	HG03571	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,951
essv25715632	alu insertion	NA18876	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,013
essv25715633	alu insertion	NA18923	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,438
essv25715634	alu insertion	NA19119	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,073
essv25715635	alu insertion	NA19225	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,045
essv25715636	alu insertion	NA19351	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,893
essv25715637	alu insertion	NA19451	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,770
essv25715638	alu insertion	NA19834	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	4,190

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv25715610	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715611	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715612	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715613	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715614	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715615	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715616	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715617	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715618	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715619	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715620	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715621	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715622	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715623	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715624	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715625	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715626	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715627	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715628	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715629	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715630	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715631	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715632	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715633	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715634	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715635	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715636	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715637	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715638	Remapped	Perfect	NC_000023.11:g.152 663306_152663307in s277	GRCh38.p12	First Pass	NC_000023.11	ChrX	152,663,306	152,663,306
essv25715610	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715611	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715612	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715613	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715614	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715615	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715616	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715617	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715618	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715619	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715620	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715621	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715622	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715623	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715624	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715625	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715626	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715627	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715628	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715629	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715630	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715631	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715632	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715633	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715634	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715635	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715636	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715637	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777
essv25715638	Submitted genomic		NC_000023.10:g.151 831777_151831778in s277	GRCh37 (hg19)		NC_000023.10	ChrX	151,831,777	151,831,777

dbVar

Database of genomic structural variation

esv3890407

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.