esv3890619
- Organism: Homo sapiens
- Study:estd214 (1000 Genomes Consortium Phase 3)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):1000 Genomes Project Consortium et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 149 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 149 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3890619 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 9,703,919 | 9,703,919 |
| esv3890619 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 9,856,515 | 9,856,515 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| essv25777167 | mobile element insertion | SAMN00006820 | Sequencing | Read depth and paired-end mapping | Homozygous | 2,877 |
| essv25777168 | mobile element insertion | SAMN00006596 | Sequencing | Read depth and paired-end mapping | Homozygous | 2,732 |
| essv25777169 | mobile element insertion | SAMN00009122 | Sequencing | Read depth and paired-end mapping | Homozygous | 2,787 |
| essv25777170 | mobile element insertion | SAMN00006598 | Sequencing | Read depth and paired-end mapping | Homozygous | 2,835 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25777167 | Remapped | Perfect | NC_000012.12:g.970 3919_9703920ins? | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 9,703,919 | 9,703,919 |
| essv25777168 | Remapped | Perfect | NC_000012.12:g.970 3919_9703920ins? | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 9,703,919 | 9,703,919 |
| essv25777169 | Remapped | Perfect | NC_000012.12:g.970 3919_9703920ins? | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 9,703,919 | 9,703,919 |
| essv25777170 | Remapped | Perfect | NC_000012.12:g.970 3919_9703920ins? | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 9,703,919 | 9,703,919 |
| essv25777167 | Submitted genomic | NC_000012.11:g.985 6515_9856516ins? | GRCh37 (hg19) | NC_000012.11 | Chr12 | 9,856,515 | 9,856,515 | ||
| essv25777168 | Submitted genomic | NC_000012.11:g.985 6515_9856516ins? | GRCh37 (hg19) | NC_000012.11 | Chr12 | 9,856,515 | 9,856,515 | ||
| essv25777169 | Submitted genomic | NC_000012.11:g.985 6515_9856516ins? | GRCh37 (hg19) | NC_000012.11 | Chr12 | 9,856,515 | 9,856,515 | ||
| essv25777170 | Submitted genomic | NC_000012.11:g.985 6515_9856516ins? | GRCh37 (hg19) | NC_000012.11 | Chr12 | 9,856,515 | 9,856,515 |