esv3891590
- Organism: Homo sapiens
- Study:estd224 (Suktitipat et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:264,755
- Publication(s):Suktitipat et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3625 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 3629 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 1108 SVs from 29 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
esv3891590 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,813,745 | 11,879,832 | 11,985,139 | 12,078,499 |
esv3891590 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,813,745 | 11,879,832 | 11,985,139 | 12,078,499 |
esv3891590 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 11,803,745 | 11,869,832 | 11,975,139 | 12,068,499 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Copy number |
---|---|---|---|---|
essv25787223 | copy number loss | SNP array | Probe signal intensity | 1 |
essv25799628 | copy number loss | SNP array | Probe signal intensity | 1 |
essv25779818 | copy number loss | SNP array | Probe signal intensity | 1 |
essv25798332 | copy number loss | SNP array | Probe signal intensity | 1 |
essv25796850 | copy number loss | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
essv25787223 | Remapped | Perfect | NC_000009.12:g.(?_ 11813745)_(1198513 9_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,813,745 | 11,985,139 |
essv25799628 | Remapped | Perfect | NC_000009.12:g.(?_ 11817216)_(1202087 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,817,216 | 12,020,873 |
essv25779818 | Remapped | Perfect | NC_000009.12:g.(?_ 11848457)_(1202087 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,848,457 | 12,020,873 |
essv25798332 | Remapped | Perfect | NC_000009.12:g.(?_ 11879832)_(1206132 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,879,832 | 12,061,324 |
essv25796850 | Remapped | Perfect | NC_000009.12:g.(?_ 11880490)_(1207849 9_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,880,490 | 12,078,499 |
essv25787223 | Remapped | Perfect | NC_000009.11:g.(?_ 11813745)_(1198513 9_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,813,745 | 11,985,139 |
essv25799628 | Remapped | Perfect | NC_000009.11:g.(?_ 11817216)_(1202087 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,817,216 | 12,020,873 |
essv25779818 | Remapped | Perfect | NC_000009.11:g.(?_ 11848457)_(1202087 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,848,457 | 12,020,873 |
essv25798332 | Remapped | Perfect | NC_000009.11:g.(?_ 11879832)_(1206132 4_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,879,832 | 12,061,324 |
essv25796850 | Remapped | Perfect | NC_000009.11:g.(?_ 11880490)_(1207849 9_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,880,490 | 12,078,499 |
essv25787223 | Submitted genomic | NC_000009.10:g.(?_ 11803745)_(1197513 9_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,803,745 | 11,975,139 | ||
essv25799628 | Submitted genomic | NC_000009.10:g.(?_ 11807216)_(1201087 3_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,807,216 | 12,010,873 | ||
essv25779818 | Submitted genomic | NC_000009.10:g.(?_ 11838457)_(1201087 3_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,838,457 | 12,010,873 | ||
essv25798332 | Submitted genomic | NC_000009.10:g.(?_ 11869832)_(1205132 4_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,869,832 | 12,051,324 | ||
essv25796850 | Submitted genomic | NC_000009.10:g.(?_ 11870490)_(1206849 9_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,870,490 | 12,068,499 |