esv3893900
- Organism: Homo sapiens
- Study:estd224 (Suktitipat et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:298,877
- Publication(s):Suktitipat et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 790 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 790 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 236 SVs from 16 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
esv3893900 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 27,076,754 | 27,076,754 | 27,375,630 | 27,375,630 |
esv3893900 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 27,078,376 | 27,078,376 | 27,377,252 | 27,377,252 |
esv3893900 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 26,687,474 | 26,687,474 | 26,986,350 | 26,986,350 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Copy number |
---|---|---|---|---|
essv25798605 | copy number loss | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
essv25798605 | Remapped | Perfect | NC_000004.12:g.(?_ 27076754)_(2737563 0_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 27,076,754 | 27,375,630 |
essv25798605 | Remapped | Perfect | NC_000004.11:g.(?_ 27078376)_(2737725 2_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 27,078,376 | 27,377,252 |
essv25798605 | Submitted genomic | NC_000004.10:g.(?_ 26687474)_(2698635 0_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 26,687,474 | 26,986,350 |