esv3900714
- Organism: Homo sapiens
- Study:estd225 (Magnusson et al. 2016)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:112,610
- Publication(s):Magnusson et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 511 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 511 SVs from 54 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3900714 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 11,537,323 | 11,649,932 |
| esv3900714 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 11,538,947 | 11,651,556 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| essv25821672 | copy number loss | SNP array | SNP genotyping analysis | 1 |
| essv25821673 | copy number loss | SNP array | SNP genotyping analysis | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25821672 | Remapped | Perfect | NC_000004.12:g.115 37323_11649932del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 11,537,323 | 11,649,932 |
| essv25821673 | Remapped | Perfect | NC_000004.12:g.115 37323_11649932del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 11,537,323 | 11,649,932 |
| essv25821672 | Submitted genomic | NC_000004.11:g.115 38947_11651556del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 11,538,947 | 11,651,556 | ||
| essv25821673 | Submitted genomic | NC_000004.11:g.115 38947_11651556del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 11,538,947 | 11,651,556 |