esv3900867
- Organism: Homo sapiens
- Study:estd225 (Magnusson et al. 2016)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:82,468
- Publication(s):Magnusson et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 426 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 203 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 425 SVs from 65 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3900867 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 66,053,905 | 66,136,372 |
| esv3900867 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_012132916.1 | Chr3|NW_01 2132916.1 | 30,705 | 113,172 |
| esv3900867 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 66,039,580 | 66,122,047 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| essv25820740 | copy number loss | SNP array | SNP genotyping analysis | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25820740 | Remapped | Perfect | NW_012132916.1:g.3 0705_113172del | GRCh38.p12 | Second Pass | NW_012132916.1 | Chr3|NW_01 2132916.1 | 30,705 | 113,172 |
| essv25820740 | Remapped | Perfect | NC_000003.12:g.660 53905_66136372del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 66,053,905 | 66,136,372 |
| essv25820740 | Submitted genomic | NC_000003.11:g.660 39580_66122047del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 66,039,580 | 66,122,047 |