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dbVar

Database of genomic structural variation

esv3902033

Organism: Homo sapiens

Study:estd225 (Magnusson et al. 2016)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:136,086

Publication(s):Magnusson et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 843 SVs from 70 studies. See in: genome view

Remapped(Score: Perfect):105,227,475-105,363,560

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3902033	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	105,227,475	105,363,560
esv3902033	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	104,563,176	104,699,261

Variant Call Information

Variant Call ID	Type	Method	Analysis	Copy number
essv25821134	copy number loss	SNP array	SNP genotyping analysis	1
essv25821136	copy number loss	SNP array	SNP genotyping analysis	1

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv25821134	Remapped	Perfect	NC_000005.10:g.105 227475_105363560de l	GRCh38.p12	First Pass	NC_000005.10	Chr5	105,227,475	105,363,560
essv25821136	Remapped	Perfect	NC_000005.10:g.105 227475_105363560de l	GRCh38.p12	First Pass	NC_000005.10	Chr5	105,227,475	105,363,560
essv25821134	Submitted genomic		NC_000005.9:g.1045 63176_104699261del	GRCh37 (hg19)		NC_000005.9	Chr5	104,563,176	104,699,261
essv25821136	Submitted genomic		NC_000005.9:g.1045 63176_104699261del	GRCh37 (hg19)		NC_000005.9	Chr5	104,563,176	104,699,261

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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