esv3988082
- Organism: Homo sapiens
- Study:estd229 (Fakhro et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array, Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:8,686
- Publication(s):Fakhro et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 137 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 137 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3988082 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 20,122,657 | 20,131,342 |
| esv3988082 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 20,103,301 | 20,111,986 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| essv25899027 | deletion | DGMQ-32145 | SNP array, Sequencing | Other, Probe signal intensity, Read depth | 1 | 1,532 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv25899027 | Remapped | Perfect | NC_000020.11:g.(20 122657_?)_(?_20131 342)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 20,122,657 | 20,131,342 |
| essv25899027 | Submitted genomic | NC_000020.10:g.(20 103301_?)_(?_20111 986)del | GRCh37 (hg19) | NC_000020.10 | Chr20 | 20,103,301 | 20,111,986 |